Testing for grogu
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Daniel Pozsar b4549fe5b2
now we have a working documentation
2 months ago
docs now we have a working documentation 2 months ago
src/grogupy almost ready for packaging 2 months ago
tests almost ready for packaging 2 months ago
.coverage copy pasted grogu 3 months ago
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.pre-commit-config.yaml cleaning up repository and trying packaging 2 months ago
.readthedocs.yaml working on documentation 2 months ago
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README.md now we have a working documentation 2 months ago
Relativistic magnetic interactions from non-orthogonal basis sets.pdf added article 2 months ago
input.fdf testing input.fdf and reading input.fdf 2 months ago
local_operator.ipynb added black:jupyter to pre-commit, made the output nicer so it is easier to debug code, experimented with no results... :'( 3 months ago
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requirements.txt threadpoolctl is needed for numpy thread management 2 months ago
test.ipynb testing input.fdf and reading input.fdf 2 months ago

README.md

Relativistic magnetic interactions from non-orthogonal basis sets

More on the theoretical background can be seen on arXiv.

TODO

Testing

  • Run tests on different magnetic materials and compare it to Grogu Matlab --> ran on Jij_for_Marci_6p45ang, but I could not compare data

Developing

  • Use ReadThe Docs addons
  • Check the symmetrization of the Hamiltonian and overlap matrix to make them hermitian
  • Check if exchange field has scalar part
  • Add more tests!!
  • io stuff

Building wheel

See detailed documentation on PYPI.

  • First you need some API Tokens for Test PYPI ,to be able to upload. You can read about it here. I own the current project, so you have to contact me.

Use the following commands for a quick setup:

  • Build wheel
python -m build
  • Push to PYPI test repository
python -m twine upload --repository testpypi dist/*

Usage

For end users

Download and install from PYPI test repository. Be aware that this is not up to date yet!!!

python3 -m pip install --index-url https://test.pypi.org/simple/ grogu_magn

For developers

  • Clone repository from Gitea
git clone https://gitea.vo.elte.hu/et209d/grogu.git
  • Create a virtual environment (.venv) (for example with VsCode)

    • Use python 3.9.6
    • install dependencies from:
      • requirements.txt
      • requirements-dev.txt
      • /docs/requirements.txt
  • Install and run pre-commit

pre-commit install
pre-commit run --all-files

To build the documentation navigate to the docs/source folder. Then autogenerate the documentation and build. After this the html page can be found in docs/source/_build/html. Follow the commands below.

cd docs/source
sphinx-apidoc -o ./implementation/ ../../src/ 
make clean
make html

To build a pdf containing the documentation instead of make, first navigate to the docs/source folde, then use the rst2pdf extension.

cd docs/source
sphinx-apidoc -o ./implementation/ ../../src/ 
sphinx-build -b pdf . _build/pdf